From 9293252bc48089a280eb8b26fab219fa49b6fee5 Mon Sep 17 00:00:00 2001
From: Adylan Roaffa <adylanrff@gmail.com>
Date: Thu, 11 Apr 2019 22:17:19 +0700
Subject: [PATCH] add readme and output writer
---
.vscode/settings.json | 38 +
Makefile | 14 +-
README.md | 136 +
output/output.txt | 5000 +++++++++++++++++++++++++++++++++++
radixsort_serial | Bin 0 -> 13704 bytes
src/radixSort/radixSort.cu | 11 +-
src/radixSort/radixSort.cuh | 1 -
src/radixsort_paralel.cu | 6 +-
src/radixsort_serial.c | 1 +
src/util/util.cpp | 22 +-
src/util/util.hpp | 4 +-
11 files changed, 5211 insertions(+), 22 deletions(-)
create mode 100644 .vscode/settings.json
create mode 100644 README.md
create mode 100644 output/output.txt
create mode 100755 radixsort_serial
diff --git a/.vscode/settings.json b/.vscode/settings.json
new file mode 100644
index 0000000..f043d8f
--- /dev/null
+++ b/.vscode/settings.json
@@ -0,0 +1,38 @@
+{
+ "files.associations": {
+ "array": "cpp",
+ "*.tcc": "cpp",
+ "cctype": "cpp",
+ "clocale": "cpp",
+ "cstdarg": "cpp",
+ "cstdint": "cpp",
+ "cstdio": "cpp",
+ "cstdlib": "cpp",
+ "cwchar": "cpp",
+ "cwctype": "cpp",
+ "unordered_map": "cpp",
+ "vector": "cpp",
+ "exception": "cpp",
+ "fstream": "cpp",
+ "functional": "cpp",
+ "initializer_list": "cpp",
+ "iosfwd": "cpp",
+ "iostream": "cpp",
+ "istream": "cpp",
+ "limits": "cpp",
+ "memory": "cpp",
+ "new": "cpp",
+ "ostream": "cpp",
+ "sstream": "cpp",
+ "stdexcept": "cpp",
+ "streambuf": "cpp",
+ "system_error": "cpp",
+ "type_traits": "cpp",
+ "tuple": "cpp",
+ "typeinfo": "cpp",
+ "utility": "cpp",
+ "cmath": "cpp",
+ "string_view": "cpp",
+ "string": "cpp"
+ }
+}
\ No newline at end of file
diff --git a/Makefile b/Makefile
index ffb4e92..4831438 100644
--- a/Makefile
+++ b/Makefile
@@ -2,18 +2,16 @@ CXX := gcc
CUDA := nvcc
OUTPUT_DIR := output
LIB := -lm
-EXEC_PARALEL := radixsort_paralel
-EXEC_SERIAL := radixsort_serial
-
-debug:
- @mkdir -p ${OUTPUT_DIR}
- ${CUDA} src/radixsort_paralel.cu src/cudaUtil/cudaUtil.cu src/radixSort/radixSort.cu src/util/util.cpp --device-c
- ${CUDA} radixsort_paralel.o util.o cudaUtil.o radixSort.o -o bin/radixsort_paralel.out
+EXEC_PARALEL := radixsort_paralel.o radixSort.o
+EXEC_SERIAL := radixsort_serial.o
+all:
+ make clean
+ make build
build:
@mkdir -p ${OUTPUT_DIR}
- ${CUDA} src/radixsort_paralel.cu src/cudaUtil/cudaUtil.cu src/radixSort/radixSort.cu src/util/util.cpp --device-c
+ ${CUDA} src/radixsort_paralel.cu src/cudaUtil/cudaUtil.cu src/radixSort/radixSort.cu src/util/util.cpp --device-c
${CUDA} radixsort_paralel.o util.o cudaUtil.o radixSort.o -o bin/radixsort_paralel.out
${CXX} src/util/util.cpp src/radixsort_serial.c -o ${EXEC_SERIAL}
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..d09a9e3
--- /dev/null
+++ b/README.md
@@ -0,0 +1,136 @@
+# Praktikum 2 - Open MPI Radix Sort
+
+## Daftar Isi
+- [Praktikum 2 - Open MPI Radix Sort](#praktikum-2---open-mpi-radix-sort)
+ - [Daftar Isi](#daftar-isi)
+ - [Overview](#overview)
+ - [Petunjuk Penggunaan](#petunjuk-penggunaan)
+ - [Prerequisites](#prerequisites)
+ - [Installing](#installing)
+ - [Running The Program](#running-the-program)
+ - [Pembagian Tugas](#pembagian-tugas)
+ - [1. Tugas - Adylan Roaffa Ilmy](#1-tugas---adylan-roaffa-ilmy)
+ - [2. Tugas - Ayrton Cyril](#2-tugas---ayrton-cyril)
+ - [Laporan Pengerjaan](#laporan-pengerjaan)
+ - [Deskripsi Solusi](#deskripsi-solusi)
+ - [Analisis Solusi](#analisis-solusi)
+ - [Pemetaan Thread & Jumlah Thread](#pemetaan-thread--jumlah-thread)
+ - [Spesifikasi *Hardware*](#spesifikasi-hardware)
+ - [Pengukuran Kinerja](#pengukuran-kinerja)
+ - [Analisis Kinerja](#analisis-kinerja)
+ - [Authors](#authors)
+
+## Overview
+Implementasi *Radix Sort* secara paralel pada OpenMPI. Radix Sort adalah algoritma sorting yang mengurutkan data menggunakan kunci bilangan (integer) dengan melakukan pengelompokan kunci berdasarkan angka yang memiliki kesamaan posisi dan nilai (ratusan dengan ratusan, puluhan dengan puluhan). Ide utama dari algoritma ini adalah melakukan pengurutan untuk setiap angka (digit) dari least significant digit sampai dengan most significant digit.
+
+## Petunjuk Penggunaan
+
+### Prerequisites
+
+Berikut adalah *library* yang harus sudah di-*install* pada komputer anda.
+
+1. GCC version 7+
+2. [CUDA Toolkit](https://developer.nvidia.com/cuda-downloads)
+
+### Installing
+
+1. Panggil command `make` pada *root directory* repository ini.
+ \
+ Setelah melakukan pemanggilan command `make`, diharapkan akan ada output sebagai berikut:
+ ```
+ make clean
+ make[1]: Entering directory '/data'
+ make[1]: Leaving directory '/data'
+ make build
+ make[1]: Entering directory '/data'
+ nvcc src/radixsort_paralel.cu src/cudaUtil/cudaUtil.cu src/radixSort/radixSort.cu src/util/util.cpp --device-c
+ nvcc radixsort_paralel.o util.o cudaUtil.o radixSort.o -o bin/radixsort_paralel.out
+ gcc src/util/util.cpp src/radixsort_serial.c -o radixsort_serial.o
+ make[1]: Leaving directory '/data'
+ ```
+ Apabila telah keluar output seperti di atas, program telah berhasil di-*install*.
+
+### Running The Program
+
+1. Ketikkan `bash run_cuda.sh <N>` untuk menjalankan program *Radix Sort* dengan <N> adalah jumlah elemen pada array yang ingin diurutkan.
+
+2. Apabila program berhasil dijalankan, akan keluar output yang menandakan waktu yang dibutuhkan untuk melakukan algoritma *Radix Sort*.\
+Contoh:
+ ```
+ $ bash run_cuda.sh 500000
+
+ Sorted!
+
+ Parallel execution time = 258747.
+
+ Serial execution time = 751007.
+ ```
+
+
+## Pembagian Tugas
+
+### 1. Tugas - Adylan Roaffa Ilmy
+|No|Tugas|
+|---|---|
+|1|Optimasi CUDA + analisis|
+|2|Output writer|
+|3|Membuat README.md|
+
+### 2. Tugas - Ayrton Cyril
+|No|Tugas|
+|---|---|
+|1 | Membuat paralel create bucket|
+|2 | Membuat copy output|
+|3 | Membuat penghitung waktu|
+
+
+## Laporan Pengerjaan
+
+### Deskripsi Solusi
+1. Melakukan sorting radix sort dengan Most Significant Bit
+2. Membagi element array yang sudah di sort ke setiap proses. Setiap thread dibagi serata mungkin dengan aturan tidak boleh ada kumpulan Most Significant Bit yang sama yang terpisah di 2 proses yang berbeda
+3. Lakukan radix sort pada setiap masing-masing proses
+4. Gabungkan kembali hasil sorting ke array pada root
+
+### Analisis Solusi
+Dari hasil analisis yang paling berpengaruh dalam performa *Radix Sort CUDA* adalah dengan menggunakan GPU dalam melaksanakan pengurutan array. *Overhead* yang diakibatkan oleh fungsi ***cudaMalloc*** dan ***cudaMemcpy*** adalah hal yang menyebabkan algoritma *Radix Sort* terasa lambat apabila dijalankan secara parallel.
+
+### Pemetaan Thread & Jumlah Thread
+Jumlah thread yang digunakan pada kasus ini adalah **256 thread**. Hal ini dikarenakan pada CUDA GPU, thread harus dalam kelipatan 32. Dan berdasarkan percobaan yang telah kami lakukan, jumlah thread yang paling optimal dalam penyelesaian kasus *Radix Sort* adalah sejumlah **256 thread**.
+
+### Spesifikasi *Hardware*
+
+Percobaan digunakan dengan menggunakan **Asus ROG GL552-VW** dengan spesifikasi sebagai berikut
+
+|No| Nama | Keterangan|
+|---| -----| -----|
+|1| Processor| Intel Skylake Core i7-6700HQ CPU, quad-core 2.6 GHz (3.5 GHz TBoost)|
+|2| Video| Integrated Intel HD 530 + **Nvidia GTX 960M 4GB**|
+|3| Memory| 16 GB DDR4 2133Mhz (2xDIMMs)|
+|4| Storage| 1 TB 2.5″ HDD (Hitachi HTS5410)|
+
+
+### Pengukuran Kinerja
+Satuan kinerja yang digunakan adalah ukuran waktu dengan satuan *microseconds (μs)*. Berikut adalah hasil pengukuran kinerja algoritma *Radix Sort* yang dijalankan secara parallel dibandingkan dengan *Radix Sort* yang dijalankan secara serial.
+Hasil dicatat dilakukan dengan laptop.
+
+- Pengetesan pada local
+
+|No | N | Waktu Eksekusi Serial (μs)| Waktu Eksekusi Parallel (μs)|
+|---|----|----|----|
+| 1 |5.000|1241505<br>1229600<br>780531|1190322<br>1180110<br>732153|
+| 2 |50.000|991688<br>1012789<br>735255|894433<br>874755<br>613396|
+| 3 |100000|1733229<br>578202<br>1188002|1522080<br>390158<br>997728|
+| 4 |200000|1316615<br>526201<br>1248599|978895<br>190177<br>167008
+| 5 |400000|2167407<br>1481110<br>2252768|1541969<br>836728<br>1615249|
+
+### Analisis Kinerja
+Seperti yang dapat dilihat pada bagian pengukuran kinerja di atas, dapat dilihat bahwa pengerjaan secara parallel hampir selalu dapat melampaui waktu pengerjaan *Radix Sort* dibandingkan dengan pengerjaan secara serial. Ini berarti algoritma parallel yang kami buat telah dapat melampaui *baseline* yang telah ditetapkan oleh pengerjaan secara serial.
+
+Namun, dikarenakan dengan *overhead* fungsi *cudaMalloc* dan *cudaMemcpy* yang masing-masing berfungsi untuk melakukan alokasi dan melakukan *copy* pada *GPU device*, terkadang waktu eksekusi *Radix Sort* secara paralel dapat lebih lambat dibandingkan pengerjaan secara serial. Oleh karena itu, *cudaMalloc* dan *cudaMemcpy* merupakan sebab lambannya pengerjaan secara parallel menggunakan CUDA.
+
+## Authors
+
+* **Adylan Roaffa Ilmy** - *13516016*
+* **Ayrton Cyril Niwarlangga** - *13516019*
+
diff --git a/output/output.txt b/output/output.txt
new file mode 100644
index 0000000..f9c8882
--- /dev/null
+++ b/output/output.txt
@@ -0,0 +1,5000 @@
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diff --git a/src/radixSort/radixSort.cu b/src/radixSort/radixSort.cu
index 9a5182a..8558501 100644
--- a/src/radixSort/radixSort.cu
+++ b/src/radixSort/radixSort.cu
@@ -22,9 +22,10 @@ __global__ void copyToArray(int arr[], int output[], int n){
}
}
+
void countSort(int arr[], int n, int exp) {
- dim3 gridSize(20,1,1);
- dim3 blockSize(20,1,1);
+ dim3 gridSize(1,1,1);
+ dim3 blockSize(256,1,1);
int *d_output, *output = (int*) malloc(sizeof(int) * n);
int *d_arr, *d_count;
int i, count[10] = {0};
@@ -45,13 +46,13 @@ void countSort(int arr[], int n, int exp) {
for (i = 1; i < 10; i++)
count[i] += count[i - 1];
- // Build the output array
+ // // Build the output array
for (i = n - 1; i >= 0; i--)
{
output[count[ (arr[i]/exp)%10 ] - 1] = arr[i];
count[ (arr[i]/exp)%10 ]--;
- }
-
+ }
+
// Copy the output array to arr[], so that arr[] now
// contains sorted numbers according to current digit
cudaMemcpy(d_output, output, sizeof(int) * n, cudaMemcpyHostToDevice);
diff --git a/src/radixSort/radixSort.cuh b/src/radixSort/radixSort.cuh
index 1b73c9c..12d59c2 100644
--- a/src/radixSort/radixSort.cuh
+++ b/src/radixSort/radixSort.cuh
@@ -2,6 +2,5 @@
#define RADIX_SORT_CUH
void radix_sort(int arr[], int n);
-__device__ void sortMSB(int* out, int* arr, int n);
#endif
\ No newline at end of file
diff --git a/src/radixsort_paralel.cu b/src/radixsort_paralel.cu
index 8520fc3..4a104e2 100644
--- a/src/radixsort_paralel.cu
+++ b/src/radixsort_paralel.cu
@@ -28,11 +28,11 @@ int main(int argc, char *argv[]) {
gettimeofday(&start, NULL);
radix_sort(arr, n);
gettimeofday(&end, NULL);
-
+
+ assert_sorted(arr,n);
printf("\n");
printf("Parallel execution time = %ld.\n", getTimeDiff(start, end));
-
-
+ writeOutputToFile(arr, n, "output.txt");
return 0;
}
diff --git a/src/radixsort_serial.c b/src/radixsort_serial.c
index ac2d806..2c47c2f 100644
--- a/src/radixsort_serial.c
+++ b/src/radixsort_serial.c
@@ -100,5 +100,6 @@ int main(int argc, char** argv)
printf("\n");
printf("Serial execution time = %ld.\n", getTimeDiff(start, end));
+ printf("Writing output to file...\n");
return 0;
}
\ No newline at end of file
diff --git a/src/util/util.cpp b/src/util/util.cpp
index d43dbb1..771f547 100644
--- a/src/util/util.cpp
+++ b/src/util/util.cpp
@@ -2,6 +2,7 @@
#include <stdlib.h>
#include <limits.h>
#include <stdio.h>
+#include <string.h>
void generate_random(int *arr, int n){
int seed = 13516016;
@@ -29,7 +30,7 @@ int get_max(int arr[], int n){
return max;
}
-void assert_sorted(int arr[], int n, double time_elapsed){
+void assert_sorted(int arr[], int n){
int err_index = 0;
for (int i=0; i<n-1; i++){
if (arr[i] > arr[i+1]){
@@ -42,8 +43,21 @@ void assert_sorted(int arr[], int n, double time_elapsed){
} else {
printf("Not sorted after index %d\n", err_index);
}
-
- printf("Time elapsed : %f microseconds\n", time_elapsed*1000000);
-
}
+void writeOutputToFile(int* arr, int size, const char* filename){
+ FILE *fp;
+ char path[50];
+ sprintf(path, "output/%s", filename);
+ fp = fopen(path, "w+");
+ if (fp == NULL)
+ {
+ printf("Error opening file!\n");
+ exit(1);
+ }
+ printf("Writing to output/output.txt\n");
+ for (int i = 0; i < size; i++) {
+ fprintf(fp, "%d\n", arr[i]);
+ }
+ fclose(fp);
+}
\ No newline at end of file
diff --git a/src/util/util.hpp b/src/util/util.hpp
index db69ab8..20b11b0 100644
--- a/src/util/util.hpp
+++ b/src/util/util.hpp
@@ -3,7 +3,9 @@
void generate_random(int* arr, int n);
// void print_arr(int * array, int num_elements);
-void assert_sorted(int arr[], int n, double time_elapsed);
+void assert_sorted(int arr[], int n);
int get_max(int arr[], int n);
long getTimeDiff(struct timeval start, struct timeval end);
+void writeOutputToFile(int* arr, int size, const char* filename);
+
#endif
\ No newline at end of file
--
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